change names of files into different folders
0
I actually have several folders with one file into each of them
for exemple :
name_folder1
name_folder1_GCA_567.9_genomic.fna
name_folder2
name_folder2_GCA_9002.0_genomic.fna
name_folder2
name_folder2_GCA_234.0_genomic.fna
And what I'm trying to do is to get inside all these folder a different name and change the files' names such as:
name_folder1
name_folder1.fna
name_folder2
name_folder2.fna
name_folder2
name_folder2.fna
Does someone have an idea?
I can also gather all my files into one file if it makes it easier:
name_folder1_GCA_567.9_genomic.fna
name_folder2_GCA_9002.0_genomic.fna
name_folder2_GCA_234.0_genomic.fna
change to :
name_folder1.fna
name_folder2.fna
name_folder2.fna
Thank you very much for your time.
rename
asked Jan 8 at 16:17
GrendelGrendel
1011
add a comment |
0
I actually have several folders with one file into each of them
for exemple :
name_folder1
name_folder1_GCA_567.9_genomic.fna
name_folder2
name_folder2_GCA_9002.0_genomic.fna
name_folder2
name_folder2_GCA_234.0_genomic.fna
And what I'm trying to do is to get inside all these folder a different name and change the files' names such as:
name_folder1
name_folder1.fna
name_folder2
name_folder2.fna
name_folder2
name_folder2.fna
Does someone have an idea?
I can also gather all my files into one file if it makes it easier:
name_folder1_GCA_567.9_genomic.fna
name_folder2_GCA_9002.0_genomic.fna
name_folder2_GCA_234.0_genomic.fna
change to :
name_folder1.fna
name_folder2.fna
name_folder2.fna
Thank you very much for your time.
rename
asked Jan 8 at 16:17
GrendelGrendel
1011
what did you try?
– RoVo
Jan 8 at 16:29
For the second choice I tried something like:for f in /ncbi/*.fna; do mv -v "$f" "${f/_GCA.*_genomic/""}"; donemy idea being to replace all the part from_GCAto_genomicby nothing for all files but it does not work I'm not really familiar with bash
– Grendel
Jan 8 at 16:31
I finally found ! by doingfor f in *.fna; do mv "$f" "${f/_GCA*_genomic/""}"; done. :)
– Grendel
Jan 8 at 16:34
add a comment |
0
0
0
I actually have several folders with one file into each of them
for exemple :
name_folder1
name_folder1_GCA_567.9_genomic.fna
name_folder2
name_folder2_GCA_9002.0_genomic.fna
name_folder2
name_folder2_GCA_234.0_genomic.fna
And what I'm trying to do is to get inside all these folder a different name and change the files' names such as:
name_folder1
name_folder1.fna
name_folder2
name_folder2.fna
name_folder2
name_folder2.fna
Does someone have an idea?
I can also gather all my files into one file if it makes it easier:
name_folder1_GCA_567.9_genomic.fna
name_folder2_GCA_9002.0_genomic.fna
name_folder2_GCA_234.0_genomic.fna
change to :
name_folder1.fna
name_folder2.fna
name_folder2.fna
Thank you very much for your time.
rename
asked Jan 8 at 16:17
GrendelGrendel
1011
I actually have several folders with one file into each of them
for exemple :
name_folder1
name_folder1_GCA_567.9_genomic.fna
name_folder2
name_folder2_GCA_9002.0_genomic.fna
name_folder2
name_folder2_GCA_234.0_genomic.fna
And what I'm trying to do is to get inside all these folder a different name and change the files' names such as:
name_folder1
name_folder1.fna
name_folder2
name_folder2.fna
name_folder2
name_folder2.fna
Does someone have an idea?
I can also gather all my files into one file if it makes it easier:
name_folder1_GCA_567.9_genomic.fna
name_folder2_GCA_9002.0_genomic.fna
name_folder2_GCA_234.0_genomic.fna
change to :
name_folder1.fna
name_folder2.fna
name_folder2.fna
Thank you very much for your time.
rename
rename
asked Jan 8 at 16:17
GrendelGrendel
1011
asked Jan 8 at 16:17
GrendelGrendel
1011
edited Jan 8 at 16:26
Grendel
asked Jan 8 at 16:17
GrendelGrendel
1011
asked Jan 8 at 16:17
GrendelGrendel
1011
asked Jan 8 at 16:17
GrendelGrendel
1011
1011
what did you try?
– RoVo
Jan 8 at 16:29
For the second choice I tried something like:for f in /ncbi/*.fna; do mv -v "$f" "${f/_GCA.*_genomic/""}"; donemy idea being to replace all the part from_GCAto_genomicby nothing for all files but it does not work I'm not really familiar with bash
– Grendel
Jan 8 at 16:31
I finally found ! by doingfor f in *.fna; do mv "$f" "${f/_GCA*_genomic/""}"; done. :)
– Grendel
Jan 8 at 16:34
add a comment |
what did you try?
– RoVo
Jan 8 at 16:29
For the second choice I tried something like:for f in /ncbi/*.fna; do mv -v "$f" "${f/_GCA.*_genomic/""}"; donemy idea being to replace all the part from_GCAto_genomicby nothing for all files but it does not work I'm not really familiar with bash
– Grendel
Jan 8 at 16:31
I finally found ! by doingfor f in *.fna; do mv "$f" "${f/_GCA*_genomic/""}"; done. :)
– Grendel
Jan 8 at 16:34
what did you try?
– RoVo
Jan 8 at 16:29
what did you try?
– RoVo
Jan 8 at 16:29
For the second choice I tried something like:
for f in /ncbi/*.fna; do mv -v "$f" "${f/_GCA.*_genomic/""}"; done my idea being to replace all the part from _GCA to _genomic by nothing for all files but it does not work I'm not really familiar with bash– Grendel
Jan 8 at 16:31
For the second choice I tried something like:
for f in /ncbi/*.fna; do mv -v "$f" "${f/_GCA.*_genomic/""}"; done my idea being to replace all the part from _GCA to _genomic by nothing for all files but it does not work I'm not really familiar with bash– Grendel
Jan 8 at 16:31
I finally found ! by doing
for f in *.fna; do mv "$f" "${f/_GCA*_genomic/""}"; done. :)– Grendel
Jan 8 at 16:34
I finally found ! by doing
for f in *.fna; do mv "$f" "${f/_GCA*_genomic/""}"; done. :)– Grendel
Jan 8 at 16:34
add a comment |
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what did you try?
– RoVo
Jan 8 at 16:29
For the second choice I tried something like:
for f in /ncbi/*.fna; do mv -v "$f" "${f/_GCA.*_genomic/""}"; donemy idea being to replace all the part from_GCAto_genomicby nothing for all files but it does not work I'm not really familiar with bash– Grendel
Jan 8 at 16:31
I finally found ! by doing
for f in *.fna; do mv "$f" "${f/_GCA*_genomic/""}"; done. :)– Grendel
Jan 8 at 16:34